Recent Posts

• September 28, 2021

  New BioRxiv pre-print

  We have a new BioRχiv pre-print in which we describe how to apply our LIONESS method to different network reconstruction algorithms and data types. In the pre-print, we highlight how decisions related to data preprocessing may affect the output networks, discuss some of the properties specific to networks modeled with LIONESS, and give examples of how to perform downstream analysis on LIONESS networks. The BioRχiv pre-print can be found...

• September 20, 2021

  New network tools

  We updated the website's tools section to include new methods developed by the group that will be released soon, including PORCUPINE and retriever.

• September 15, 2021

  Building bridges

  The NCMM recently interviewed Marieke about some of the group's collaborations. The news article, Building Bridges, can be accessed here. It also includes some updates on our research in the past year.

• September 13, 2021

  New publication

  We are happy to announce that Marouen's database, the Gene RegulAtory Network Database (GRAND) has been published in Nucleic Acids Research! GRAND was developed in the Quackenbush group and is a large resource of genome-wide networks across multiple human tissues, disease states, and cell lines. It hosts, for example, all of the patient-specific gene regulatory networks we modeled for our recently published study in...

• September 08, 2021

  New publication

  We are thrilled to announce that our comparative network analysis in glioblastoma has been accepted for publication in Cancer Research and is now available in OnlineFirst version.