Recent Posts

• October 06, 2022

  New publication

  We have a new publication in Frontiers in Digital Health as part of a collaboration with several groups through the NCI/DOE 2020 Ideas Lab: Toward Building a Cancer Patient "Digital Twin". The article describes five new approaches to build predictive cancer patient digital twins. More information on the publication can be found here.

• August 31, 2022

  New publication

  We have a new publication in Cell Reports, as part of a collaboration with Victor Greiff, University of Oslo. Victor's team developed an approach to study immune receptor repertoires that uses similarity networks to derive a multidimensional picture of the immune repertoire landscape. More information on the publication can be found here.

• August 10, 2022

  New group member

  We are very excited to announce that Joel Rodríguez Herrera has joined Kuijjer and Mathelier labs on a student internship. Joel is a Bachelor's student in Genomic Sciences from the National Autonomous University of Mexico (UNAM). He will be working on a joined project with Anthony Mathelier's group, predicting promoter-enhancer interactions using message passing approaches.

• July 13, 2022

  New group member

  We are very excited to announce that Bror Johannes Tidemand Ruud has joined the lab for the summer. Bror is a student from the Department of Biosciences (IBV), University of Oslo. He is joining us to learn computational approaches and will be working with Tatiana and Daniel on tumor deconvolution using gene regulatory networks.

• June 28, 2022

  New BioRχiv pre-print

  We just posted a new version of our previous BioRχiv pre-print on normalization for network modeling by Ping-Han. Ping-Han found that certain normalization methods, in specific quantile-based methods, can introduce false positive associations in co-expression measurements. However, there methods can be very powerful. Smooth quantile normalization, for example, allows one to normalize heterogeneous data, while keeping global expression differences between different subgroups of samples. Ping-Han therefore developed a new...