Recent Posts

• June 07, 2022

  New group member

  We are very excited to announce that Kristine Lippestad has joined the lab for the summer. Kristine is a Master's student in Biotechnology from The Norwegian University of Science and Technology (NTNU) in Trondheim, where she specializes in Systems Biology. She will be working with Tatiana on modeling gene regulatory heterogeneity in breast cancer subtypes.

• June 03, 2022

  UNIFOR-FRIMED funding

  The Kuijjer group has received funding from the Foundation for the Promotion of Cancer Research, University of Oslo (Stiftelsen for fremme av kreftforskningen ved Universitetet i Oslo), UNIFOR-FRIMED. The funded project will include spatial transcriptomics profiling of breast cancer samples, and will be in collaboration with Xavier Tekpli's group at Oslo University Hospital. We are looking forward to start generating some data soon!

• June 02, 2022

  New BioRxiv pre-print

  Marouen Ben Guebila from the Quackenbush group developed NetZoo, multilingual package that includes various tools for network reconstruction and analysis, including PyPanda, PUMA, LIONESS, and SAMBAR. NetZoo is available on github. The BioRχiv pre-print includes analyses to demonstrate the value of the integrated toolkit and can be found here. More information on the pre-print can be found here.

• June 01, 2022

  New group member

  We are very excited to announce that Ladislav Hovan has joined the lab as a postdoctoral fellow. Ladislav has a PhD in chemistry from University College London and previously did postdoctoral research in molecular dynamics at the University of Geneva, Switzerland. Ladislav's project will focus on developing approaches to model spatially resolved gene regulation.

• April 22, 2022

  New publication

  We are happy to announce that Netbooks has been published in Nature Methods! Netbooks is a hosted collection of Jupyter notebooks that provide detailed and annotated step-by-step case studies of gene regulatory network analysis. The project is led by Marouen Ben Guebila from the Quackenbush group, with contributions from Romana. More information on the publication can be found here.